PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19840.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 223aa    MW: 24416.3 Da    PI: 5.9792
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19840.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.81.8e-5440136197
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++y
  mrna19840.1-v1.0-hybrid  40 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLY 125
                              69************************************************************************************ PP

                    NF-YB  87 lkkyrelegek 97 
                              l+++re+eg++
  mrna19840.1-v1.0-hybrid 126 LHRFREMEGDR 136
                              *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-5135141IPR009072Histone-fold
SuperFamilySSF471132.17E-3843140IPR009072Histone-fold
PfamPF008084.5E-2646110IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-167492No hitNo description
PROSITE patternPS0068507793IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-1693111No hitNo description
PRINTSPR006152.2E-16112130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSQTAGLKLS EIDMKLAEIN HTNNGVAASA AATDDNECTV REQDRFMPIA NVIRIMRKIL  60
PPHAKISDDA KETIQECVSE YISFITGEAN ERCQREQRKT ITAEDVLWAM SKLGFDDYIE  120
PLTLYLHRFR EMEGDRGSMR AETLMKAGTR AMSAAEYHAA ASGSFAGFAP FHHHGFFGYL  180
KDASTSNGAG TSLSHQANAV AALVNIGDHL QASHSQYDDN SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-4139131193NF-YB
4awl_B5e-4139131294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4139131294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1155800.0KM115580.1 UNVERIFIED: Rosa canina leafy cotyledon 1-A protein-like (LEC1-A) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295333.11e-164PREDICTED: nuclear transcription factor Y subunit B-6
SwissprotQ84W665e-71NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLA0A061GPD81e-86A0A061GPD8_THECC; Nuclear transcription factor Y subunit B-6
TrEMBLA3KLH98e-87A3KLH9_THECC; Leafy cotyledon1-like protein
STRINGGLYMA07G39820.11e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.12e-72nuclear factor Y, subunit B6